Job Details

Job Title

Computational Pathology Scientist

Employment Type

12-Month / W2 Contract with the possibility for extensions. (Fully On-Site or Hybrid TBD)

Role Overview

BEPC is actively seeking a Computational Pathology Scientist to join a groundbreaking team within Translational Safety Pathology at a leading biotech company in South San Francisco, CA. This role will support digital pathology initiatives by developing and applying image analysis tools—spanning traditional techniques to advanced deep learning—for preclinical research and histopathological slide analysis. The ideal candidate brings a strong background in Python programming, machine learning, and digital image processing, with a collaborative mindset and the ability to communicate complex concepts to interdisciplinary teams including pathologists and biologists.

Key Responsibilities

• Design, develop, and implement computational pipelines for image processing of whole-slide histopathology data
• Leverage traditional image processing and modern machine learning techniques (e.g., segmentation, classification)
• Collaborate closely with pathologists to ensure image analysis workflows align with biological questions
• Utilize commercial and open-source pathology software (e.g., OpenSlide, HALO, Visiopharm, QuPath)
• Handle gigapixel-scale whole-slide images using efficient and scalable methods
• Conduct data visualization and statistical analysis to support preclinical research
• Implement version control, reproducible workflows, and contribute to cross-functional collaborations
• Optionally contribute to deep learning model development using PyTorch, TensorFlow, or Keras
• Participate in pipeline orchestration, HPC model training, and possibly cloud-based deployments (AWS EC2)
• Communicate analysis results and computational strategies effectively across scientific disciplines

Required Qualifications

• Education: MS or PhD in Data Science, Computer Science, Biomedical Engineering, or a related field
• Experience: 2+ years of hands‑on experience in image analysis or computational pathology

Technical Skills (Required)

• Image analysis using both traditional and machine learning techniques
• Whole‑slide image (WSI) processing using tools such as OpenSlide
• Version control with Git and use of GitHub or GitLab
• Strong understanding of statistical analysis and data visualization tools

Preferred Skills (Nice to Have)

• Deep learning expertise (e.g., PyTorch, TensorFlow, Detectron2)
• Experience with HPC environments and job schedulers like SLURM
• Familiarity with commercial pathology software (HALO, Visiopharm, QuPath)
• Experience with workflow orchestration tools (e.g., Dagster, Airflow)
• GUI development using Tkinter or PyQt

Soft Skills

• Strong collaborative mindset and willingness to iterate based on feedback
• Excellent interpersonal and communication skills, especially across interdisciplinary teams
• Pay Rate: $59.00 - $62.94 per hour (W2)
• Work Arrangement: On‑Site (Hybrid may be considered) – South San Francisco, CA
• Benefits: Medical, Dental, Vision, and Paid Life Insurance

Location: South San Francisco, CA

Base Pay Range

$59.00/hr - $62.94/hr

About BEPC

BEPC Inc., founded in 2007, is a 100% employee‑owned company providing top‑tier consulting and staffing solutions across industries like technology, engineering, manufacturing, and project management. At BEPC, we are driven by innovation and a commitment to excellence. We take pride in fostering a collaborative and innovative environment where our team members thrive. With competitive benefits, including medical, dental, vision, and life insurance, BEPC is dedicated to supporting our employees' personal and professional growth.

Apply Now!

Apply now via our website to join an innovative team at a leading biotech company.